Heraklion has long been a gateway to Crete’s ancient wonders, but today it’s also fast becoming a destination for modern foodies looking for more than just history. If you’re following a gluten-free diet, you’ll be pleased to know that the city’s pizza scene has undergone a quiet revolution. Gluten-free pizza in Heraklion is no longer something you have to hunt down—it’s part of the main menu, and it’s getting better with every passing year.
From relaxed waterfront cafés to tucked-away trattorias in the Old Town, restaurants are stepping up their game. Forget bland, crumbly bases—here, gluten-free doughs are crafted with skill using flours like chickpea, rice, quinoa, and almond meal. The result? Crusts that are crisp, chewy, and capable of carrying generous toppings without falling apart.
More importantly for coeliacs and gluten intolerant diners, Heraklion’s top spots are treating safety seriously. Many venues have invested in separate preparation zones, dedicated utensils, and even gluten-free only ovens to ensure that every meal is both delicious and safe.
As for the flavours, you’re truly spoilt for choice. Expect traditional favourites like Margherita and Prosciutto e Funghi, alongside more adventurous creations topped with local cheeses, sun-dried tomatoes, oregano, and even Cretan cured meats. Vegan and dairy-free options are also becoming more common, ensuring there’s something for every preference.
Whether you’re grabbing a casual slice between sightseeing or settling in for a leisurely dinner by the sea, gluten-free pizza in Heraklion offers real quality without compromise. This guide rounds up six brilliant places where gluten-free innovation meets Cretan hospitality—proving you can travel, indulge, and still stick to your gluten-free diet in style.
1. Mare Coffee Bar & Food
Set just steps from the waterfront, Mare Coffee Bar & Food is best known for its ocean views and cool, casual vibe. But dig into the menu and you’ll find one of the more creative takes on gluten-free pizza in Heraklion, made with equal parts care and flair.
Rather than sticking to just one type of flour, Mare uses a blend of chickpea and brown rice flours to achieve a light, crisp crust with enough strength to handle generous toppings. Gluten-free pizzas are prepped separately, with their own trays and dedicated kitchen utensils, ensuring safe dining for coeliacs.
Topping favourites include the “Mare Margherita,” with buffalo mozzarella and heirloom tomatoes, and the “Seaside Special,” pairing prawns, rocket and lemon zest over a thin spread of basil pesto. All pizzas can be made gluten-free on request, and they also offer gluten-free desserts like coconut panna cotta if you fancy finishing on a sweet note.
The setting is breezy, bright and super casual—perfect for sunset snacks, casual dates, or chilled-out afternoons with a cocktail and a view. Gluten-free pizza here feels less like a special request and more like a normal part of a laid-back, lovely menu.
2. La Bussola
Tucked down one of the quieter streets near Lion Square, La Bussola is one of those rare places that manages to feel traditional and innovative at the same time. For anyone chasing excellent gluten-free pizza in Heraklion, it’s absolutely one to have on your radar.
Their gluten-free dough is made with a mix of rice flour, potato starch and a splash of olive oil, rested overnight for maximum flavour. What’s really impressive is that gluten-free pizzas are handled completely separately—different trays, different cutters, and trained staff who understand coeliac safety standards.
On the menu, standout choices include the “Prosciutto e Funghi,” topped with Parma ham and sautéed mushrooms, and the “Vegetariana,” loaded with grilled aubergine, courgette and peppers. Every pizza can be ordered gluten-free, and the kitchen is flexible if you want to create your own combo.
La Bussola’s interior is warm and welcoming, with rustic stone walls, candlelight, and a cosy buzz that makes it perfect for date nights or family meals. Whether you’re sitting indoors or on the leafy terrace, gluten-free diners can relax knowing their pizza will be every bit as good as the regular offering—and 100% safe to enjoy.
3. Kuzina Casual Food
In a city packed with options, Kuzina Casual Food stands out by offering hearty, comforting dishes with a modern twist—and that includes some of the most reliably satisfying gluten-free pizza in Heraklion.
Their gluten-free bases are crafted from a combination of quinoa flour, almond meal and tapioca starch, resulting in a slightly nutty flavour and soft yet durable texture. What’s more, Kuzina prepares gluten-free pizzas using separate pans and slicers to help minimise cross-contamination risks, making it a smart choice for coeliacs.
Menu highlights include the “Kuzina Classic,” stacked with Greek sausage, mozzarella and roasted red peppers, and the “Mediterranean Green,” featuring artichokes, olives, spinach and vegan feta. All pizzas can be made gluten-free upon request, and they’re very open to mixing and matching toppings to accommodate personal tastes or dietary needs.
The setting is lively but relaxed, with bright decor, communal tables and plenty of outdoor seating for those sunny Cretan afternoons. It’s the kind of place where you can drop in wearing flip-flops after the beach and still leave feeling like you had a proper, well-cared-for meal. Gluten-free diners, in particular, will appreciate Kuzina’s relaxed attitude combined with serious kitchen diligence.
4. Amalia’s Kitchen
Set a few streets back from the Heraklion Port, Amalia’s Kitchen brings a slice of international fusion to Crete, and happily, they haven’t forgotten about those seeking gluten-free pizza in Heraklion either.
Their approach is refreshingly thoughtful: gluten-free pizzas here are made with a blend of rice and chickpea flours, giving a chewy bite with just a hint of rustic graininess. While not a completely gluten-free kitchen, Amalia’s takes allergens seriously, using separate surfaces, colour-coded utensils and oven spaces for gluten-free orders.
Top picks from the menu include the “Amalia Special” with spicy lamb sausage, yoghurt dressing and mint leaves, and the “Veggie Supreme,” bursting with grilled aubergine, zucchini, red onion and feta. Gluten-free bases are offered for all pizzas, and the team are more than happy to recommend other gluten-free starters or sides to round out your meal.
Amalia’s Kitchen has an eclectic, vibrant feel, with local art on the walls, a buzzing open kitchen, and a young, friendly team who genuinely want everyone to enjoy their dining experience. It’s an excellent option for anyone looking to enjoy bold flavours—and a safe, gluten-free bite—in the heart of the city.
5. Peskesi
Famous across Crete for celebrating local, organic produce and traditional Cretan recipes, Peskesi might not be the first name you associate with pizza. But for those on the hunt for a truly authentic, wheat-free bite, it offers one of the more unique gluten-free pizza experiences in Heraklion.
Peskesi’s gluten-free crust is crafted from ancient grains like teff and amaranth, blended with local olive oil to create a base that’s nutty, earthy and a little different from the usual gluten-free fare. Each pizza is baked individually on its own dedicated tray to protect against cross-contamination, making it a safe choice for coeliac visitors.
Their topping combinations change seasonally, but standout options include the “Cretan Harvest,” with sun-dried tomatoes, graviera cheese, capers and oregano, and the “Shepherd’s Pie,” featuring slow-cooked lamb, thyme and caramelised onions. Gluten-free versions are happily made on request, with staff well-versed in allergy protocols.
The atmosphere at Peskesi is intimate and atmospheric, filled with rustic stone walls, flickering candles and tables dressed with wild herbs. It’s the perfect spot for those who want to enjoy not only gluten-free pizza, but a true taste of Crete’s culinary soul.
6. Silfio
Overlooking a peaceful residential square, Silfio feels like one of Heraklion’s best-kept secrets—and it’s also a haven for anyone seeking a relaxed yet properly made gluten-free pizza in Heraklion.
Their gluten-free bases are made fresh daily, using a gentle blend of rice flour, cornmeal and flaxseed. The result is a thin, slightly crisp pizza that’s light but full of flavour. Silfio treats gluten-free orders with care: pizzas are prepped on separate boards, cooked on lined trays, and delivered to your table flagged for safety.
Topping favourites include the “Aegean Breeze,” with white sauce, prawns, dill and lemon zest, and the “Silfio Special,” loaded with smoked pancetta, mushrooms, and truffle cream. Gluten-free bases can be requested across the menu, and there’s even a small but mighty gluten-free dessert section.
The restaurant’s laid-back charm—wooden tables spilling out onto the quiet square, fairy lights, soft acoustic playlists—makes it perfect for a relaxed evening away from the tourist buzz. If you’re gluten-free and craving a safe, delicious, and thoroughly chilled-out pizza experience, Silfio is a must-visit.
Why Gluten-Free Pizza in Heraklion Is Worth Celebrating
Heraklion’s reputation as a foodie destination is growing fast—and for gluten-free diners, it’s a particularly exciting time. No longer limited to simple salads or second-rate substitutes, gluten-free pizza in Heraklion now offers the full experience: crispy crusts, creative toppings, and thoughtful, coeliac-safe preparation.
From Mare’s laid-back seaside dining to the rustic heritage flavours at Peskesi, the city’s pizzerias are proving that going gluten-free doesn’t mean giving up great taste. Whether you prefer a bright, casual café or a candlelit, traditional setting, Heraklion offers options that feel crafted with real care, not just obligation.
Importantly, many restaurants are now genuinely invested in allergy safety—baking gluten-free pizzas on dedicated trays, using separate utensils, and clearly communicating about ingredients. It’s this mix of quality, creativity, and awareness that makes Heraklion stand out among other Mediterranean cities for gluten-free travellers.
If pizza is one of your travel loves, Heraklion absolutely belongs on your map.
FAQs
Is it easy to find gluten-free pizza in Heraklion?
Yes! Many restaurants, both casual and upscale, now offer gluten-free bases and are happy to customise orders to suit dietary needs.
Are the gluten-free pizzas safe for coeliacs?
Many places featured here use separate prep areas, trays, and utensils. It’s still best to mention coeliac disease when ordering to ensure extra care.
What types of flour are used for gluten-free pizza bases in Heraklion?
You’ll find bases made with rice flour, chickpea flour, cornmeal, almond meal, flaxseed, teff, and even amaranth—each venue adding its own spin.
Can I find vegan and gluten-free pizzas as well?
Definitely. Several restaurants offer dairy-free cheese or vegetable-based toppings that can be combined with gluten-free bases.
Is there an extra charge for gluten-free pizzas?
Usually a small one—typically around €1.50 to €2—reflecting the premium ingredients and separate preparation involved.
Which neighbourhoods in Heraklion are best for gluten-free pizza?
The city centre, around Lion Square, and the marina front are your best bets for finding a great variety of gluten-free pizza spots.
