Kyoto wears its history like a kimono—elegant, layered, and full of quiet surprises. It’s the kind of place where you can lose hours tracing moss-covered temple paths, sipping matcha beneath a canopy of cherry blossoms, or watching the gentle sway of the Arashiyama bamboo grove. But in between its timeless rituals and peaceful corners, the city has carved out a thoroughly modern niche—one that just happens to involve pizza, and more importantly, pizza without the gluten.
For travellers living with gluten intolerance or those committed to a gluten-free diet, Kyoto may not spring to mind as a pizza haven. But it should. In 2025, the city’s chefs are proving that precision and tradition can coexist with creativity and inclusivity. The result? Some of the most exciting gluten-free pizza in Kyoto, made with care, flair, and often, a uniquely Japanese twist.
This isn’t about imitation—it’s about innovation. Charred, wood-fired crusts made from rice or buckwheat flours; toppings that flirt with local ingredients like miso-marinated aubergine or fresh yuba; vegan options so rich you’ll do a double take. These aren’t pizzas that shout about being gluten-free—they simply happen to be, and they do it exceptionally well.
Tucked between tea houses and torii gates are six unforgettable spots where coeliac diners are more than accommodated—they’re celebrated. Each offers its own blend of comfort, style and culinary excellence, all without a trace of gluten. Whether you’re in search of a tranquil dinner or a post-sightseeing slice, Kyoto has you covered.
So, slip off your shoes, settle in, and let this be your guide to a pizza experience you won’t forget—one that’s deeply rooted in flavour, and completely free of gluten-related worries.
1. Napule Pizza Kyoto Gion: Neapolitan Soul in Gion’s Glow
Gluten-free pizza in Kyoto finds a romantic home at Napule Pizza Kyoto Gion, a Neapolitan-style pizzeria nestled in the lantern-lit streets of Gion. This charming spot feels like an Italian trattoria teleported to Japan, with exposed brick walls, flickering candles, and a wood-fired oven that’s the heart of the show. It’s the perfect place to unwind after spotting a geisha or two.
Their gluten-free bases are a masterclass in balance—crisp yet chewy, crafted with rice flour to hold up under classic toppings like buffalo mozzarella, fresh basil, or spicy salami. The Margherita is a purist’s dream, its simplicity letting quality shine, while the Quattro Formaggi offers a cheesy escape for indulgence seekers. Gluten-free pizza in Kyoto feels authentic here, with separate prep areas ensuring coeliac safety. The staff, warm and attentive, double-check dietary needs, making you feel like family. Pair your pizza with a glass of Italian vino or a yuzu-infused soda for a local touch. It’s pricier—expect ¥2,500-3,500 per pie—but for Gion’s ambience and flawless execution, it’s worth every yen. Book ahead, as tables fill faster than a Kamo River festival. Don’t skip the GF tiramisu; it’s a creamy love letter to Italy.
- Address: 570-127 Gionmachi Minamigawa, Higashiyama Ward, Kyoto, 605-0074
- Why Visit?: GF Neapolitan pizza in Gion’s historic heart.
- Fun Fact: Their oven’s stoked with Japanese oak for a smoky kiss!
2. Goichi Pizza: Artisanal Pies with Japanese Flair
Gluten-free pizza in Kyoto gets a creative spin at Goichi Pizza, a Shichijo gem that’s redefining pizza with Japanese finesse. Tucked near the Kyoto National Museum, this cosy spot boasts a minimalist vibe—think bamboo accents and soft jazz—that’s as soothing as a temple garden. It’s a haven for coeliacs craving something unique.
Their GF bases, made with a house-blend rice flour, are thin and crispy, designed to showcase bold toppings. The “Kyoto Harvest” pizza, with local kabocha pumpkin and shiso, is a love letter to Kansai’s seasons, while the classic Marinara keeps things timeless. Gluten-free pizza in Kyoto shines here, with dedicated tools ensuring no gluten sneaks in. The “Miso Margherita,” blending miso paste with mozzarella, is a quirky hit that screams Japan. Staff are meticulous, often explaining the menu’s coeliac safety in flawless English. Pair your pie with a GF sake or plum juice for a Kyoto vibe. It’s ideal for a quiet lunch or a post-museum treat, though tables are snug—book early. Save room for the GF mochi brownie; it’s a fusion dessert that’ll leave you grinning.
- Address: 7-2 Shichijo Goshonouchi Minamimachi, Shimogyo Ward, Kyoto, 600-8864
- Why Visit?: GF pizza with Japanese twists in a serene setting.
- Fun Fact: Their dough ferments for 24 hours—pure artisan magic!
3. Cafe & Bar Maru: Retro Charm, Gluten-Free Comfort
Gluten-free pizza in Kyoto takes a nostalgic turn at Cafe & Bar Maru, a retro-inspired spot in Nakagyo that’s all about comfort and cool. With vinyl records spinning, checkered floors, and a bar glowing under fairy lights, it feels like a Showa-era diner meets modern Kyoto. It’s perfect for coeliacs craving a laid-back bite.
Their GF pizzas are crafted with a rice-based crust that’s golden and crisp, holding up to toppings like teriyaki chicken, local mushrooms, or a classic pepperoni kick. Gluten-free pizza in Kyoto feels like a warm hug here, with separate ovens keeping things safe. The “Maru Special,” with Kyoto tofu and a sesame drizzle, blends Italian and Japanese souls. The staff’s friendly vibe and coeliac know-how make ordering a breeze, and they’ve got GF beers—think Asahi Dry Zero—for a proper pairing. Open till midnight, it’s great for a late-night feast after exploring Nishiki Market. The GF mango panna cotta is a tropical delight you won’t want to miss. No reservations needed, but peak hours buzz, so time your visit. This is Kyoto dining with a side of funk.
- Address: 429-1 Nakagyocho, Nakagyo Ward, Kyoto, 604-8073
- Why Visit?: GF pizza with retro flair and late-night vibes.
- Fun Fact: Their bar serves GF cocktails inspired by Kyoto’s seasons!
4. cafe planet : Plant-Powered Pizza Paradise
Gluten-free pizza in Kyoto reaches zen perfection at cafe planet, a 100% vegan and coeliac-safe haven in Kita Ward. This airy café, with its white walls, potted plants, and sunlit windows, feels like a wellness retreat. It’s a dream for anyone craving guilt-free indulgence with a side of Kyoto calm.
Their GF pizzas use a chickpea-and-rice flour base that’s light yet satisfying, topped with house-made vegan cheeses that melt like magic. The “Planet Glow,” with roasted lotus root and wasabi mayo, is a Japanese-inspired gem, while the classic tomato-basil keeps it simple. Gluten-free pizza in Kyoto doesn’t get purer—every dish is coeliac-safe, no questions asked. The “Matcha Mushroom” pizza, blending Kyoto’s famed tea with earthy shiitake, is a bold win. Staff are warm, often chatting about ingredients, and the menu’s vegan-GF clarity is a relief. Pair with a kombucha or GF oat latte for maximum zen. It’s perfect for a solo lunch or a post-Kinkaku Temple refuel. Save room for the GF yuzu cheesecake—it’s sunshine in dessert form. Book for lunch; this planet’s orbit gets crowded.
- Address: 23-1 Kamigamo Sakuracho, Kita Ward, Kyoto, 603-8054
- Why Visit?: 100% vegan-GF pizza in a serene café.
- Fun Fact: Their ingredients are sourced from Kyoto’s organic farms!
5. Premarché Alternative Diner: Quirky Pies with Global Soul
Gluten-free pizza in Kyoto gets a global twist at Premarché Alternative Diner, a vibrant Shimogyo spot that’s part diner, part foodie lab. With graffiti walls, mismatched chairs, and a playlist hopping from reggae to J-pop, it’s a funky escape from Kyoto’s temple trail. Coeliacs, this one’s for you.
Their GF pizzas are built on a rice-flour base that’s crisp and sturdy, ready for wild toppings like kimchi and mozzarella, Thai curry veggies, or classic prosciutto and rocket. Gluten-free pizza in Kyoto turns adventurous here, with separate prep ensuring safety. The “World Trek” pizza, with shiso and smoked salmon, is a fusion masterpiece. The staff’s laid-back vibe and coeliac diligence make it a breeze to dine, and they’ve got GF beers and kombucha to pair. It’s great for groups or a post-Kyoto Station shopping spree, with a buzzing vibe that screams fun. The GF matcha tiramisu is a creamy, green-tea revelation—don’t miss it. Book for dinner, as this diner fills up like a Gion festival float. Gluten-free pizza in Kyoto feels like a party at Premarché.
- Address: 5-1 Higashinotoincho, Shimogyo Ward, Kyoto, 600-8099
- Why Visit?: GF pizza with global flair in a quirky diner.
- Fun Fact: Their menu changes monthly, inspired by staff travels!
6. CHOICE: Health-Conscious Pizzas with Kyoto Charm
Gluten-free pizza in Kyoto finds a wholesome haven at CHOICE, a Sanjo health-food spot that’s all about mindful eating with maximum flavour. This airy café, with blonde wood, green tiles, and a sunny patio, feels like a Kyoto garden indoors. It’s a go-to for coeliacs craving pizza that’s as kind to the body as it is to the soul.
Their GF pizzas use a buckwheat-and-rice base that’s golden and crisp, topped with wellness-driven combos like kale and tofu cream or local heirloom tomatoes with basil. Gluten-free pizza in Kyoto gets a glow-up here, with dedicated tools keeping things coeliac-safe. The “Kyoto Balance” pizza, with mizuna greens and a sesame glaze, is a local favourite. Staff are attentive, often explaining ingredient sourcing, and the menu’s clear about allergens. Pair with a GF smoothie—think yuzu and ginger—or a rice-based beer for a Kyoto twist. It’s ideal for a post-Philosopher’s Path lunch or a solo treat. The GF kinako mochi cake is a nutty, sweet must-try. Book for weekends; this choice spot draws health nuts galore. Gluten-free pizza in Kyoto feels like self-care at CHOICE.
- Address: 12-3 Sanjocho, Nakagyo Ward, Kyoto, 604-8036
- Why Visit?: GF pizza that’s healthy and heartfelt.
- Fun Fact: Their herbs grow on-site—fresher than fresh!
Conclusion: Gluten-Free Pizza in Kyoto—A Coeliac’s Zen Feast
Gluten-free pizza in Kyoto has blossomed into something truly special in 2025—a culinary experience that blends safety, creativity, and tranquillity with the elegance the city is known for. For anyone living with gluten intolerance or following a strict gluten-free diet, Kyoto now offers a food journey where peace of mind meets indulgent satisfaction.
In true Kyoto fashion, the gluten-free offerings here are rooted in precision and balance. Whether it’s a crispy base crafted from rice flour or a carefully layered topping bursting with local and seasonal ingredients, every detail is handled with care. Kitchens across the city are stepping up with dedicated spaces, strict protocols, and a genuine understanding of what coeliacs need to dine without worry.
But Kyoto goes beyond just ticking the boxes—it infuses the dining experience with its signature grace. Picture yourself enjoying a slice while overlooking a peaceful riverbank, or discovering a hidden café tucked beneath maple leaves just beginning to blush with autumn colour. Gluten-free pizza in Kyoto is more than a meal—it’s a moment of connection with the city’s slower rhythm and refined spirit.
There’s also plenty of variety to explore. From wood-fired favourites to modern plant-based twists, Kyoto offers a breadth of options to suit every mood, whether you’re craving comfort food after a temple trek or looking to refuel after a stroll through the Philosopher’s Path.
Ultimately, Kyoto proves that gluten-free dining doesn’t have to be a compromise. It can be delightful, immersive, and even a little bit magical. So come with an open heart and a hungry belly—because in this city of harmony, every gluten-free slice is a step toward culinary serenity.
